4. Fangren Lan, Xiqiong Wang, Qianqian Zhou, Xiaochang Li, Jiaming Jin, Wenxin Zhang, Chaoliang Wen, Guiqin Wu, Guangqi Li, Yiyuan Yan, Ning Yang* & Congjiao Sun.Deciphering the coordinated roles of the host genome, duodenal mucosal genes, and microbiota in regulating complex traits in chickens[J]. Microbiome,Volume13,article number 62, (2025)
5. Ronglang Cai, Zhongtao Yin, Shuang Gu, Xuemei Deng, Hesham Y.A. Darwish, Congjiao Sun, Ning Yang*.Research note: Genetic basis of the naked-neck trait in ake chickens revealed by whole-genome sequencing[J]. Poultry Science,2024;104(4):104934
6. Jianbo Li, Xiuan Zhang, Xiqiong Wang, Zhen Wang, Xingzheng Li, Jiangxia Zheng, Junying Li, Guiyun Xu, Congjiao Sun*, Guoqiang Yi*, Ning Yang*. Single-nucleus transcriptional and chromatin accessible profiles reveal critical cell types and molecular architecture underlying chicken sex determination[J]. Journal of Advanced Research, 2024.
7. Conghao Zhong, Xiaochang Li, Dailu Guan, The ChickenGTEx Consortium, Boxuan Zhang, Xiqiong Wang, Liang Qu, Huaijun Zhou, Lingzhao Fang, Congjiao Sun*, Ning Yang*. Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses[J].Journal of Genetics and Genomics. 2024Dec;51(12):1423-1434.
8. Qiang Huang, Chaoliang Wen*, Shuang Gu, Yuchen Jie, Guangqi Li, Yiyuan Yan, Chuanyao Tian, Guiqin Wu, Ning Yang*.Synergy of gut microbiota and host genome in driving heterosis expression of chickens[J]. Journal of Genetics and Genomics.2024, 51(10): 1121-1134.
9. Yuchen Jie, Chaoliang Wen, Qiang Huang, Shuang Gu, Congjiao Sun, Guangqi Li, Yiyuan Yan, Guiqin Wu, Ning Yang*.Distinct patterns of feed intake and their association with growth performance in broilers[J]. Poultry Science, 2024, 103(9): 103974.
10. Shuang Gu, Qiang Huang, Yuchen Jie, Congjiao Sun, Chaoliang Wen, Ning Yang*. Transcriptomic and epigenomic landscapes of muscle growth during the postnatal period of broilers[J]. Journal of Animal Science and Biotechnology, 2024, 15(1): 91.
11. ShuangGu, QiangHuang, CongjiaoSun, ChaoliangWen, NingYang*. Transcriptomic and epigenomic insights into pectoral muscle fiber formation at the late embryonic development in pure chicken lines[J]. Poultry Science, 2024, 103(8): 103882.
12. Shuang Gu, Chaoliang Wen, Zhen Xiao, Qiang Huang, Zheyi Jiang, Honghong Liu, Jia Gao, Junying Li, Congjiao Sun, Ning Yang*.MyoV: a deep learning-based tool for the automated quantification of muscle fibers[J]. Briefings in Bioinformatics, 2024, 25(2): bbad528.
13. Chaoliang Wen*, Qunpu Wang, Shuang Gu, Jiaming Jin, Ning Yang*.Emerging perspectives in the gut-muscle axis: The gut microbiota and its metabolites as important modulators of meat quality[J].Microb Biotechnol. 2024 Jan;17(1):e14361.
14. Xiaoli Guo, Qianqian Zhou, Jiaming Jin, Fangren Lan, Chaoliang Wen, Junying Li, Ning Yang*and Congjiao Sun*.Hepatic steatosis is associated with dysregulated cholesterol metabolism and altered protein acetylation dynamics in chickens[J]. Journal of Animal Science and Biotechnology, 2023, 14(1): 108.
15. ZhangyuanPan, YingWang, MingshanWang, YuzheWang, XiaoningZhu, ShenwenGu, ConghaoZhong, LiqiAn, MingzhuShan, JoanaDamas, Michelle M.Halstead, DailuGuan,NaresTrakooljul, KlausWimmers, YeBi, ShangWu, Mary E.Delany, XuechenBai, Hans H.Cheng,CongjiaoSun, Ning Yang, XiaoxiangHu,Harris A.Lewin, LingzhaoFang*,HuaijunZhou*. An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics[J]. Science Advances, 2023, 9(18): eade1204.
16. Junxiao Ren, Zhengzheng Hu, Quanlin Li, Shuang Gu, Fangren Lan, Xiqiong Wang, Jianbo Li, Junying Li, Liwa Shao, Ning Yang* & Congjiao Sun*.Temperature-induced embryonic diapause in chickens is mediated by PKC-NF-κB-IRF1 signaling[J]. BMC biology, 2023, 21(1): 52.
17. ChaoliangWen, Qinli Gou, Shuang Gu, Qiang Huang, Congjiao Sun, Jiangxia Zheng, Ning Yang*. The cecal ecosystem is a great contributor to intramuscular fat deposition in broilers [J]. Poultry Science, 2023, 102(4): 102568.
18. Qianqian Zhou, Fangren Lan, Shuang Gu, Guangqi Li, Guiqin Wu, Yiyuan Yan, Xiaochang Li, Jiaming Jin, Chaoliang Wen, Congjiao Sun, Ning Yang*. Genetic and microbiome analysis of feed efficiency in laying hens. [J]. Poultry Science, 2023, 102(4): 102393.
19. Feng Zhu, Zhongtao Yin, Qiangsen Zhao, Yunxiao Sun, YuChen Jie, Jacqueline Smith,Yuze Yang, David W. Burt, Maxwell Hincke, Ziding Zhang, Mengdi Yuan, Jim Kaufman, Congjiao Sun, Junying Li,Liwa Shao*,Ning Yang*and Zhuocheng Hou*.A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes[J]. Commun Biol. 2023; 6: 1233.
20. QiangHuang,ChaoliangWen, WeiYan,CongjiaoSun, ShuangGu, JiangxiaZheng,Yang, Ning*.Comparative analysis of the characteristics of digestive organs in broiler chickens with different feed efficiencies[J].Poultry Science, 2022, 101(12): 102184.
21. ShuangGu, ChaoliangWen, JunyingLi, HonghongLiu, QiangHuang, JiangxiaZheng, CongjiaoSun, Yang Ning*. Temporal expression of myogenic regulatory genes in different chicken breeds during embryonic development[J]. International Journal of Molecular Sciences, 2022, 23(17): 10115.
22. Chaoliang Wen, Chunning Mai, Ronglang Cai, Qinli Gou, Boxuan Zhang, Junying Li, Congjiao Sun & Ning Yang*. Inheritance of the duration of fertility in chickens and its correlation with laying performance[J]. Genetics Selection Evolution, 2022, 54(1): 41.
23. Jianbo Li, Xiuan Zhang, Xiqiong Wang, Congjiao Sun, Jiangxia Zheng, Junying Li, Guoqiang Yi* & Ning Yang*. The m6A methylation regulates gonadal sex differentiation in chicken embryo[J]. Journal of Animal Science and Biotechnology, 2022, 13(1): 52.
24. Ming Li, Congjiao Sun, Naiyi Xu, Peipei Bian, Xiaomeng Tian, ... Xiaoxiang Hu*, Yu Jiang*, Ning Yang*.De novo assembly of 20 chicken genomes reveals the undetectable phenomenon for thousands of core genes on microchromosomes and subtelomeric regions[J]. Molecular Biology and Evolution, 2022, 39(4): msac066.
25. Jianbo Li, Congjiao Sun, Jiangxia Zheng, Junying Li, Guoqiang Yi*, Ning Yang*. Time-course transcriptional and chromatin accessibility profiling reveals genes associated with asymmetrical gonadal development in chicken embryos[J]. Frontiers in Cell and Developmental Biology, 2022, 10: 832132.
26. Quanlin Li, Zhongyi Duan, Congjiao Sun, Jiangxia Zheng, Guiyun Xu & Ning Yang*. Genetic variations for the eggshell crystal structure revealed by genome-wide association study in chickens. [J]. BMC Genomics. 2021, 11(2)
27. Junxiao Ren, Quanlin Li, Qinghe Zhang, Michael Clinton, Congjiao Sun, Ning Yang*. Systematic screening of long intergenic noncoding RNAs expressed during chicken embryogenesis[J]. Poultry Science, 2021, 100(7): 101160.
28. Chaoliang Wen,Wei Yan,Chunning Mai,Zhongyi Duan,Jiangxia Zheng,Congjiao Sun* & Ning Yang*. Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens.[J]. Microbiome, 2021, 9: 1-23.
29. Zhuang Liu, Congjiao Sun, Yiyuan Yan, Guangqi Li, Xiao Chang Li, Guiqin Wu, Ning Yang*. Design and evaluation of a custom 50K Infinium SNP array for egg-type chickens.[J]. Poultry Science, 2021, 100(5): 101044.
30. Chunning Mai, Chaoliang Wen, Zhiyuan Xu, Guiyun Xu, Sirui Chen, Jiangxia Zheng, Congjiao Sun* & Ning Yang*. Genetic basis of negative heterosis for growth traits in chickens revealed by genome-wide gene expression pattern analysis[J]. Journal of Animal Science and Biotechnology, 2021, 12: 1-14.
31. Ying Zhang, Yuxin Song, Jin Gao, Hengyu Zhang, Ning Yang*, Runqing Yang*. Hierarchical mixed-model expedites genome-wide longitudinal association analysis[J]. Briefings in Bioinformatics, 2021, 22(5): bbab096.
32. Ning Yang*. Egg production in China: Current status and outlook[J]. Frontiers of Agricultural Science and Engineering, 2021, 8(1): 25-34.
33. Chaoliang Wen, Chunning Mai, Bin Wang, Junying Li, Congjiao Sun* and Ning Yang*. Detrimental effects of excessive fatty acid secretion on female sperm storage in chickens.[J]. Journal of Animal Science and Biotechnology , 2020,11:26